MCScanX Web Application
Interactive web-based MCScanX analysis tool for synteny and collinearity detection.
Note: This tool runs MCScanX directly in your browser using pre-prepared BLAST and GFF files.
For more information, visit the MCScanX Tutorial page.
New: Upload Your Genome
Upload raw genome files (GFF3 + protein/CDS FASTA), run BLAST all-vs-all and MCScanX automatically, then visualize in Multi-Synteny viewer. Launch Genome Pipeline
Upload raw genome files (GFF3 + protein/CDS FASTA), run BLAST all-vs-all and MCScanX automatically, then visualize in Multi-Synteny viewer. Launch Genome Pipeline