Vaccinium oxycoccos
Vacox Ericaceae

Vaccinium oxycoccos

Ericaceae Family
Taxonomic Classification
Kingdom Plantae Family Ericaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Vaccinium oxycoccos is a species of cranberry in the heath family. It is known as small cranberry, marshberry, bog cranberry, swamp cranberry, or just cranberry. It occurs broadly across cooler climates in the temperate Northern Hemisphere.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Vaccinium oxycoccos
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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