Trema orientalis
Treor Cannabaceae

Trema orientalis

Cannabaceae Family
Taxonomic Classification
Kingdom Plantae Family Cannabaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Trema orientale is a species of flowering tree in the hemp family, Cannabaceae. It is known by many common names, including charcoal-tree, Indian charcoal-tree, pigeon wood, Oriental trema, and in Hawaii, where it has become naturalized, gunpowder tree, or nalita. It has a near universal distribution in tropical and warm temperate parts of the Old World, with a range extending from South Africa, through the Middle East, the Indian subcontinent and southern China to Southeast Asia and Australia.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Trema orientale
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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