Thalassia testudinum
Thate Hydrocharitaceae

Thalassia testudinum

Hydrocharitaceae Family
Taxonomic Classification
Kingdom Plantae Family Hydrocharitaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Thalassia testudinum, commonly known as turtlegrass, is a species of marine seagrass in the family Hydrocharitaceae. It forms meadows in shallow, sandy water in locations in the Caribbean Sea and the Gulf of Mexico. Turtle grass and other seagrasses form meadows which are important habitats and feeding grounds.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Thalassia testudinum
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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