Stri
Stri Cyperaceae Poales

Stri

580 Mb Genome Size
21 Chromosomes
Chromosome Assembly Level
27.8 Mb N50
Cyperaceae Family
2024 Release Year
Taxonomic Classification
Kingdom Plantae Class Liliopsida Order Poales Family Cyperaceae
Darwin Tree of Life · lpSchTriq1.1 · GCA_964058795.1 · 2024-06-05
Polyploidy History (PhyloWGD)
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Species Notes
Description
Schoenoplectus triqueter, commonly known as the triangular club-rush, is a species of sedge which lives in temperate Eurasian wetlands, on muddy shores and river margins. It is found across Eurasia, as well as in South Africa, and has been introduced to North America on the west coast. Because of its tolerance of salty habitats, it is considered a halophyte, but plants which were subjected to a high salinity level in an experiment were noticeably stunted.
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Image credit
© Wikimedia Commons — Stri
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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