Saccharum spontaneum
Sspo Poaceae Poales

Saccharum spontaneum

64 2n Chromosomes
Poaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Liliopsida Order Poales Family Poaceae
Genome & Ploidy
2n
64 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Saccharum spontaneum is a grass native throughout much of tropical and subtropical Asia, northern Australia, and eastern and northern Africa. It is a perennial grass, growing up to three meters in height, with spreading rhizomatous roots.
Data source
build_pgdd_species_jsons.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Saccharum spontaneum
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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