Solanum habrochaites
Shab Solanaceae Solanales

Solanum habrochaites

Solanaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Solanales Family Solanaceae
Polyploidy History (PhyloWGD)
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Species Notes
Description
Solanum habrochaites, the hairy tomato, is a species of flowering plant in the family Solanaceae, native to Ecuador and Peru. It is considered to be one of the most important sources of genetic variation for crop improvement of the cultivated tomato, Solanum lycopersicum.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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