Sequoiadendron giganteum
Seqgi Cupressaceae

Sequoiadendron giganteum

Cupressaceae Family
Taxonomic Classification
Kingdom Plantae Family Cupressaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Sequoiadendron giganteum is a species of coniferous tree, classified in the family Cupressaceae in the subfamily Sequoioideae. Giant sequoia specimens are the largest trees on Earth. They are native to the groves on the western slopes of the Sierra Nevada mountain range of California but have been introduced, planted, and grown around the world.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Sequoiadendron giganteum
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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