Sporobolus alterniflorus
Salt Poaceae Poales

Sporobolus alterniflorus

Poaceae Family
Taxonomic Classification
Kingdom Plantae Class Liliopsida Order Poales Family Poaceae
Polyploidy History (PhyloWGD)
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Species Notes
Description
Sporobolus alterniflorus, or synonymously known as Spartina alterniflora, the smooth cordgrass, saltmarsh cordgrass, or salt-water cordgrass, is a perennial deciduous grass which is found in intertidal wetlands, especially estuarine salt marshes. It has been reclassified as Sporobolus alterniflorus after a taxonomic revision in 2014, but it is still common to see Spartina alterniflora and in 2019 an interdisciplinary team of experts coauthored a report published in the journal Ecology supporting Spartina as a genus. It grows 1–1.5 m (3–5 ft) tall and has smooth, hollow stems that bear leaves up to 20–60 cm (8–24 in) long and 1.5 cm wide at their base, which are sharply tapered and bend down at their tips.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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