Rubus occidentalis
Roc Rosaceae Rosales

Rubus occidentalis

14 2n Chromosomes
Rosaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Rosales Family Rosaceae
Genome & Ploidy
2n
14 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Rubus occidentalis is a species of Rubus native to eastern North America. Its common name black raspberry is shared with other closely related species. Other names occasionally used include bear's eye blackberry, black cap, black cap raspberry, and scotch cap.
Data source
build_pgdd_species_jsons.py
Wikipedia
View article
Image credit
{'license_short': 'CC BY-SA 4.0', 'credit_html': '<span class="int-own-work" lang="en">Own work</span>', 'artist_html': '<a href="//commons.wikimedia.org/w/index.php?title=User:Gastropod_Gaming&amp;action=edit&amp;redlink=1" class="new" title="User:Gastropod Gaming (page does not exist)">Gastropod Gaming</a>', 'usage_terms': 'Creative Commons Attribution-Share Alike 4.0', 'original_source': 'Black Raspberry', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:Black_Raspberry.jpg'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
Evolutionary Analysis
Sequence Search
Related Literature (genome, WGD & evolution)
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