Quercus lobata
Qlob Fagaceae Fagales

Quercus lobata

Quercus lobata

Fagaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Fagales Family Fagaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Quercus lobata
Description
Quercus lobata, commonly called the valley oak or roble, is the largest of the California oaks. It is endemic to the state, growing in interior valleys and foothills from Siskiyou to San Diego counties. Deciduous, it requires year-round groundwater, and may live up to 600 years.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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