Quercus ilex
Qile Fagaceae Fagales

Quercus ilex

856 Mb Genome Size
12 Chromosomes
Chromosome Assembly Level
72.6 Mb N50
Fagaceae Family
2024 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Fagales Family Fagaceae
Darwin Tree of Life · dhQueIlex1.hap2.1 · GCA_964341355.1 · 2024-11-27
Polyploidy History (PhyloWGD)
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Species Notes
Description
Quercus ilex, the holly oak, also evergreen oak, is a large evergreen oak native to the Mediterranean region. It is a member of the section Ilex of the genus, with acorns that mature in a single summer.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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