Physcomitrium patens
Ppa Funariaceae Funariales

Physcomitrium patens

54 2n Chromosomes
Funariaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Bryophyta Class Bryopsida Order Funariales Family Funariaceae
Genome & Ploidy
2n
54 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Physcomitrella patens is a synonym of Physcomitrium patens, the spreading earthmoss. It is a moss, a bryophyte used as a model organism for studies on plant evolution, development, and physiology.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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