Populus trichocarpa
Potr Salicaceae Malpighiales

Populus trichocarpa

Salicaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Malpighiales Family Salicaceae
TreeGenes · v4.1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Populus trichocarpa, the black cottonwood, western balsam-poplar or California poplar, is a deciduous broadleaf tree species native to western North America. It is used for timber, and is notable as a model organism in plant biology. The tree is notable for the seed-carrying cottony fluff it releases into the air each spring.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Populus trichocarpa
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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