Populus tremuloides
Pote Salicaceae Malpighiales

Populus tremuloides

0.0 Mb N50
Salicaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Malpighiales Family Salicaceae
TreeGenes · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Populus tremuloides is a deciduous tree native to cooler areas of North America, one of several species referred to by the common name aspen. It is commonly called quaking aspen, trembling aspen, American aspen, mountain or golden aspen, trembling poplar, white poplar, and popple, as well as others. The trees have tall trunks, up to 25 metres tall, with smooth pale bark, scarred with black.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Populus tremuloides
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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