Populus deltoides
Podl Salicaceae Malpighiales

Populus deltoides

21.7 Mb N50
Salicaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Malpighiales Family Salicaceae
TreeGenes · v2.1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Populus deltoides, the eastern cottonwood or necklace poplar, is a species of cottonwood poplar native to North America, growing throughout the eastern, central, and southwestern United States as well as the southern Canadian prairies, the southernmost part of eastern Canada, and northeastern Mexico.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Populus deltoides
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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