Oryza sativa NIP
Osa Poaceae Poales

Oryza sativa NIP

24 2n Chromosomes
Poaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Liliopsida Order Poales Family Poaceae
Genome & Ploidy
2n
24 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Oryza sativa, having the common name Asian cultivated rice, is the much more common of the two rice species cultivated as a cereal, the other species being O. glaberrima, African rice. It was first domesticated in the Yangtze River basin in China 13,500 to 8,200 years ago.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
© Wikimedia Commons — Oryza sativa
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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