Oryza rufipogon
Oniv Poaceae Poales

Oryza rufipogon

Poaceae Family
Taxonomic Classification
Kingdom Plantae Class Liliopsida Order Poales Family Poaceae
Ensembl Plants · GCA_000576065.1
Polyploidy History (PhyloWGD)
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Species Notes
Description
Oryza rufipogon is a species of flowering plant in the family Poaceae. It is known as brownbeard rice, wild rice, and red rice. In 1965, Oryza nivara was separated off from O.
Wikipedia
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Image credit
© Wikimedia Commons — Oryza rufipogon
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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