Malus domestica Fuji
Mdo Rosaceae Rosales

Malus domestica Fuji

34 2n Chromosomes
Rosaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Rosales Family Rosaceae
Genome & Ploidy
2n
34 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
An apple is the round, edible fruit of an apple tree. Fruit trees of the orchard or domestic apple, the most widely grown in the genus, are cultivated worldwide. The tree originated in Central Asia, where its wild ancestor, Malus sieversii, is still found. Apples have been grown for thousands of years in Eurasia before they were introduced to North America by European colonists. Apples have cultural significance in many mythologies and religions.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
{'license_short': 'Public domain', 'credit_html': '<a rel="nofollow" class="external text" href="https://www.ars.usda.gov/Aboutus/docs.htm?docid=6310">http://www.ars.usda.gov/Aboutus/docs.htm?docid=6310</a> (<a rel="nofollow" class="external text" href="https://web.archive.org/web/20160303171132/http://www.ars.usda.gov/Aboutus/docs.htm?docid=6310">archive</a>)', 'artist_html': '<i>Agricultural Research Service</i> (Research agent of <i>United States Department of Agriculture</i>)', 'usage_terms': 'Public domain', 'original_source': '95apple', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:95apple.jpeg'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
Evolutionary Analysis
Sequence Search
Related Literature (genome, WGD & evolution)
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