Lactuca sativa PKU06
Lsa Asteraceae Asterales

Lactuca sativa PKU06

18 2n Chromosomes
Asteraceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Asterales Family Asteraceae
Genome & Ploidy
2n
18 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Lettuce is an annual plant of the family Asteraceae mostly grown as a leaf vegetable. The leaves are most often used raw in green salads, although lettuce is also seen in other kinds of food, such as sandwiches, wraps and soups; it can also be grilled. Its stem and seeds are sometimes used; celtuce is one variety grown for its stems, which are eaten either raw or cooked.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
© Wikimedia Commons — Lettuce
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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