Lithocarpus polystachyus
Litpo Fagaceae

Lithocarpus polystachyus

Fagaceae Family
Taxonomic Classification
Kingdom Plantae Family Fagaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Lithocarpus is a genus in the beech family, Fagaceae. Trees in this genus are commonly known as the stone oaks and differ from Quercus primarily because they produce insect-pollinated flowers on erect spikes and the female flowers have short styles with punctate stigmas. At current, around 340 species have been described, mostly restricted to Southeast Asia.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Lithocarpus
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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