Hypericum perforatum
Hper Hypericaceae Malpighiales

Hypericum perforatum

357 Mb Genome Size
8 Chromosomes
Chromosome Assembly Level
39.7 Mb N50
Hypericaceae Family
2025 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Malpighiales Family Hypericaceae
Darwin Tree of Life · ddHypPerf1.hap1.1 · GCA_965644135.1 · 2025-07-27
Polyploidy History (PhyloWGD)
Browse all →
Loading…
Species Notes
Description
Hypericum perforatum, commonly known as St. John's wort, is a flowering plant in the family Hypericaceae. It is a hairless, perennial herb with woody roots, yellow flowers marked by black glands, and leaves that appear perforated due to translucent glands, producing thousands of seeds per plant.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
Searching PubMed…
Back to genome list