Gossypium hirsutum
Goshi Malvaceae

Gossypium hirsutum

Malvaceae Family
Taxonomic Classification
Kingdom Plantae Family Malvaceae
PlantGIR · v2.1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Gossypium hirsutum, also known as upland cotton or Mexican cotton, is the most widely planted species of cotton in the world. Globally, about 90% of all cotton production is of cultivars derived from this species. In the United States, the world's largest exporter of cotton, it constitutes approximately 95% of all cotton production.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Gossypium hirsutum
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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