Fraxinus excelsior
Frex Oleaceae Lamiales

Fraxinus excelsior

0.1 Mb N50
Oleaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Lamiales Family Oleaceae
TreeGenes · v0.5
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Fraxinus excelsior, known as the ash, or European ash or common ash to distinguish it from other types of ash, is a flowering plant species in the olive family Oleaceae. It is native throughout mainland Europe east to the Caucasus and Alborz mountains, and west to Great Britain and Ireland, the latter determining its western boundary. The northernmost location is in the Trondheimsfjord region of Norway.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Fraxinus excelsior
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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