Fraxinus nigra
Frani Oleaceae

Fraxinus nigra

Oleaceae Family
Taxonomic Classification
Kingdom Plantae Family Oleaceae
PlantGIR · v0.2.1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Fraxinus nigra, or the black ash, is a species of ash native to much of eastern Canada and the northeastern United States, from western Newfoundland west to southeastern Manitoba, and south to Illinois and northern Virginia. Formerly abundant, as of 2017 the species is threatened with near total extirpation throughout its range within the next century as a result of infestation by an invasive parasitic insect known as the emerald ash borer.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Fraxinus nigra
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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