Dioscorea dumetorum
Diodu Dioscoreaceae

Dioscorea dumetorum

Dioscoreaceae Family
Taxonomic Classification
Kingdom Plantae Family Dioscoreaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Dioscorea dumetorum, also known as the bitter yam, cluster yam, trifoliate yam, or three-leaved yam, is a species of flowering plant in the yam family, Dioscorea. It is native to sub-Saharan Africa and especially common in the tropical regions of West Africa, including Nigeria, Benin, and Ghana. D.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Dioscorea dumetorum
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
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Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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