Cucumis sativus CLv4
Cus Cucurbitaceae Cucurbitales

Cucumis sativus CLv4

14 2n Chromosomes
Cucurbitaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Cucurbitales Family Cucurbitaceae
Genome & Ploidy
2n
14 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
The cucumber is a widely-cultivated creeping vine plant in the family Cucurbitaceae that bears cylindrical to spherical fruits, used as culinary vegetables. Considered an annual plant, there are three main types of cucumber—slicing, pickling, and seedless.
Data source
build_pgdd_species_jsons.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Cucumber
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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