Capsicum rhomboideum CA352
Crh Solanaceae Solanales

Capsicum rhomboideum CA352

26 2n Chromosomes
Solanaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Solanales Family Solanaceae
Genome & Ploidy
2n
26 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Capsicum rhomboideum is a perennial member of the genus Capsicum with 2n=2x=26, and is considered a distant wild relative of the chili pepper. Its fruit do not have any pungency, and are a 0 on the Scoville Heat Unit scale. It gets its name from the rhomboidal to elliptical shape of its leaves.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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