Chlamydomonas reinhardtii
Cre Chlamydomonadaceae Chlamydomonadales

Chlamydomonas reinhardtii

17 2n Chromosomes
Chlamydomonadaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Chlorophyta Class Chlorophyceae Order Chlamydomonadales Family Chlamydomonadaceae
Genome & Ploidy
2n
17 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Chlamydomonas reinhardtii is a single-cell green alga about 10 micrometres in diameter that swims with two flagella. It has a cell wall made of hydroxyproline-rich glycoproteins, a large cup-shaped chloroplast, a large pyrenoid, and an eyespot apparatus that senses light.
Data source
build_pgdd_species_jsons.py
Wikipedia
View article
Image credit
{'license_short': 'Public domain', 'credit_html': 'Source and public domain notice at <a rel="nofollow" class="external free" href="http://remf.dartmouth.edu/imagesindex.html">http://remf.dartmouth.edu/imagesindex.html</a>', 'artist_html': 'Dartmouth Electron Microscope Facility, Dartmouth College', 'usage_terms': 'Public domain', 'original_source': 'Chlamydomonas6-1', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:Chlamydomonas6-1.jpg'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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