Comarum palustre
Cpal3 Rosaceae Rosales

Comarum palustre

529 Mb Genome Size
21 Chromosomes
Chromosome Assembly Level
26.2 Mb N50
Rosaceae Family
2023 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Rosales Family Rosaceae
Darwin Tree of Life · drComPalu1.1 · GCA_951800085.1 · 2023-05-27
Polyploidy History (PhyloWGD)
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Species Notes
Description
Comarum palustre, known by the common name marsh cinquefoil, also purple marshlocks and swamp cinquefoil, is a waterside rhizomatous subshrub. It has a circumboreal distribution, occurring throughout cool temperate Asia, Europe, and North America, particularly in northern regions. It is most commonly found on lake shores, marshy riversides and stream margins, often partly submerged with foliage floating.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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