Corchorus capsularis
Corca Malvaceae

Corchorus capsularis

Malvaceae Family
Taxonomic Classification
Kingdom Plantae Family Malvaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Corchorus capsularis, commonly known as white jute, is a shrub species in the family Malvaceae. It is one of the sources of jute fibre, considered to be of finer quality than fibre from Corchorus olitorius, the main source of jute. The leaves are used as a foodstuff and the leaves, unripe fruit and the roots are used in traditional medicine.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Corchorus capsularis
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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