Coffea liberica
Cofl Rubiaceae Gentianales

Coffea liberica

122.6 Mb N50
Rubiaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Gentianales Family Rubiaceae
TreeGenes · v1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Coffea liberica, commonly known as Liberian coffee, is a species of flowering plant in the family Rubiaceae from which coffee is produced. It is native to western and central Africa, and has become naturalised in areas including Colombia, Venezuela, the Philippines, Borneo and Java.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Coffea liberica
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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