Citrullus ecirrhosus
Citec Cucurbitaceae

Citrullus ecirrhosus

Cucurbitaceae Family
Taxonomic Classification
Kingdom Plantae Family Cucurbitaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Citrullus ecirrhosus, commonly known as Namib tsamma, is a species of perennial desert vine in the gourd family, Cucurbitaceae, and a relative of the widely consumed watermelon. It can be found in both Namibia and the Cape Provinces of South Africa, in particular the Namib Desert. It is the sister species to the bitter melon, Citrullus amarus with which it shares hard, white and bitter flesh.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Citrullus ecirrhosus
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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