Carya illinoinensis
Cill Juglandaceae Fagales

Carya illinoinensis

Carya illinoinensis

Juglandaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Fagales Family Juglandaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Carya illinoinensis
Description
The pecan is a species of hickory native to the Southern United States and northern Mexico in the region of the Mississippi River.
Wikipedia
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Image credit
Pauline Singleton · © Pauline Singleton · CC BY-NC
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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