Coffea humilis
Chum Rubiaceae Gentianales

Coffea humilis

Coffee

Rubiaceae Family
Taxonomic Classification
Order Gentianales Family Rubiaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Coffee
Description
Coffea is a genus of flowering plants in the family Rubiaceae. Coffea species are shrubs or small trees native to tropical and southern Africa and tropical Asia. The seeds of some species, called coffee beans, are roasted and ground to brew into various coffee beverages.
Wikipedia
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Image credit
Meise Botanic Garden · © Meise Botanic Garden · CC BY
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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