Cardamine hirsuta
Chir Brassicaceae Brassicales

Cardamine hirsuta

205 Mb Genome Size
8 Chromosomes
Chromosome Assembly Level
25.6 Mb N50
Brassicaceae Family
2024 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Brassicales Family Brassicaceae
Darwin Tree of Life · ddCarHirs1.hap1.1 · GCA_964212585.1 · 2024-08-04
Polyploidy History (PhyloWGD)
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Species Notes
Description
Cardamine hirsuta, commonly called hairy bittercress, popping cress, common bittercress, hoary bittercress, hairy wood-cress, small bittercress, pepperweed, shotweed, or snapweed, is an annual or biennial species of plant in the family Brassicaceae, and is edible as a salad green. It is common in moist areas around the world.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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