Coffea canephora CA254
Cfru Rubiaceae Gentianales

Coffea canephora CA254

Coffee

Rubiaceae Family
Taxonomic Classification
Order Gentianales Family Rubiaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Coffee
Description
Coffea canephora is a species of coffee plant that has its origins in central and western sub-Saharan Africa. It is a species of flowering plant in the family Rubiaceae. Though widely known as Coffea robusta, the plant is scientifically identified as Coffea canephora, which has two main varieties, robusta and nganda.
Wikipedia
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Image credit
Meise Botanic Garden · © Meise Botanic Garden · CC BY
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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