Cercis canadensis
Cerca Fabaceae

Cercis canadensis

Fabaceae Family
Taxonomic Classification
Kingdom Plantae Family Fabaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Cercis canadensis, the eastern redbud, is a large deciduous shrub or small tree, native to eastern North America from southern Michigan south to central Mexico, west to New Mexico, but able to thrive as far west as California and as far north as southern Ontario. It is the state tree of Oklahoma and the official city tree of Huntington Beach. The prevalence of the so-called "Columbus strain" has seen the residents of Columbus, Wisconsin, embrace the plant in their city's identity.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Cercis canadensis
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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