Coffea canephora
Ccan Rubiaceae Gentianales

Coffea canephora

22 2n Chromosomes
Rubiaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta Class Magnoliopsida Order Gentianales Family Rubiaceae
Genome & Ploidy
2n
22 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Coffea canephora is a species of coffee plant that has its origins in central and western sub-Saharan Africa. It is a species of flowering plant in the family Rubiaceae. Though widely known as Coffea robusta, the plant is scientifically identified as Coffea canephora, which has two main varieties, robusta and nganda.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
{'license_short': 'CC BY-SA 3.0', 'credit_html': None, 'artist_html': None, 'usage_terms': 'Creative Commons Attribution-Share Alike 3.0', 'original_source': 'Canephora', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:Canephora.jpg'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
Evolutionary Analysis
Sequence Search
Related Literature (genome, WGD & evolution)
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