Cinchona calisaya
Ccal Rubiaceae Gentianales

Cinchona calisaya

Cinchona calisaya

Rubiaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Gentianales Family Rubiaceae
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Cinchona calisaya
Description
Cinchona calisaya is a species of shrub or tree in the family Rubiaceae. It is native to the forests of the eastern slopes of the Andes, where they grow from 200–3,300 metres (660–10,830 ft) in elevation in Peru and Bolivia. The species is known for a high quinine content, a key antimalarial alkaloid.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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