Castanea crenata
Cascr Fagaceae

Castanea crenata

Fagaceae Family
Taxonomic Classification
Kingdom Plantae Family Fagaceae
PlantGIR · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Castanea crenata, the Japanese chestnut or Korean chestnut, is a species of chestnut native to Japan and Korea. Castanea crenata exhibits resistance to Phytophthora cinnamomi, the fungal pathogen that causes ink disease in several Castanea species. The mechanism of resistance of Castanea crenata to Phytophthora cinnamomi may derive from its expression of the Cast_Gnk2-like gene.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Castanea crenata
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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