Coffea arabica
Carb Rubiaceae Gentianales

Coffea arabica

44 2n Chromosomes
Rubiaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta (Angiosperms) Class Magnoliopsida Order Gentianales Family Rubiaceae
Genome & Ploidy
2n
44 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Coffea arabica, also known as the Arabica coffee, is a species of flowering plant in the coffee and madder family Rubiaceae. It is believed to be the first species of coffee to have been cultivated and is the dominant cultivar, representing about 60% of global production. Coffee produced from the less acidic, more bitter, and more highly caffeinated robusta bean makes up most of the remaining coffee production. The natural populations of Coffea arabica are restricted to the forests of South Ethiopia and Yemen.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
{'license_short': 'Public domain', 'credit_html': '<i>Flora de Filipinas [...] Gran edicion [...] [Atlas I].</i><a rel="nofollow" class="external autonumber" href="http://bibdigital.rjb.csic.es">[1]</a>', 'artist_html': 'Francisco Manuel Blanco (O.S.A.)', 'usage_terms': 'Public domain', 'original_source': 'Coffea arabica Blanco1.53', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:Coffea_arabica_Blanco1.53.png'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
Evolutionary Analysis
Sequence Search
Related Literature (genome, WGD & evolution)
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