Castanea henryi
Caei Fagaceae Fagales

Castanea henryi

1.0 Mb N50
Fagaceae Family
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Fagales Family Fagaceae
TreeGenes · v1.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Castanea henryi, Henry chestnut, Henry's chestnut, or Chinese chinquapin, pearl chestnut, and in Chinese 錐栗, is a species of chestnut native to south-central and southeast China. A tree reaching 30 m, it is a source of good timber, but has smaller nuts than its size might suggest. Like its close relative Castanea mollissima, it is widely cultivated in China, and quite a few varieties have been developed in recent times.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Castanea henryi
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
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Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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