Brassica rapa
Brara Brassicaceae

Brassica rapa

Brassicaceae Family
Taxonomic Classification
Kingdom Plantae Family Brassicaceae
PlantGIR · v3.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Brassica rapa is an annual to biennial plant species native to Eurasia that is from the Brassicaceae family. The B. rapa subspecies oleifera is an oilseed commonly known as turnip rape, field mustard, bird's rape, and keblock.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Brassica rapa
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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