Brachypodium distachyon
Bdis Poaceae Poales

Brachypodium distachyon

10 2n Chromosomes
Poaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Angiosperms (Monocots) Class Liliopsida Order Poales Family Poaceae
Genome & Ploidy
2n
10 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Brachypodium distachyon, commonly called purple false brome or stiff brome, is a grass species native to southern Europe, northern Africa and southwestern Asia east to India. It is related to the major cereal grain species wheat, barley, oats, maize, rice, rye, sorghum, and millet. It has many qualities that make it an excellent model organism for functional genomics research in temperate grasses, cereals, and dedicated biofuel crops such as switchgrass. These attributes include small genome diploid accessions, a series of polyploid accessions, a small physical stature, self-fertility, a short lifecycle, simple growth requirements, and an efficient transformation system. The genome of Brachypodium distachyon has been sequenced and published in Nature in 2010.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Image credit
{'license_short': 'CC BY-SA 4.0', 'credit_html': '<span class="int-own-work" lang="en">Own work</span>', 'artist_html': 'Neil Harris, University of Alberta', 'usage_terms': 'Creative Commons Attribution-Share Alike 4.0', 'original_source': 'Brachypodium distachyon Bd21-3', 'image_page_url': 'https://commons.wikimedia.org/wiki/File:Brachypodium_distachyon_Bd21-3.jpg'}
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
Evolutionary Analysis
Sequence Search
Related Literature (genome, WGD & evolution)
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