Arabidopsis thaliana
Arath Brassicaceae

Arabidopsis thaliana

Brassicaceae Family
Taxonomic Classification
Kingdom Plantae Family Brassicaceae
PlantGIR · TAIR10
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Arabidopsis thaliana, the thale cress, mouse-ear cress or arabidopsis, is a small plant from the mustard family (Brassicaceae), native to Eurasia and Africa. Commonly found along the shoulders of roads and in disturbed land, it is generally considered a weed.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Arabidopsis thaliana
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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