Arabis alpina
Araal Brassicaceae

Arabis alpina

Brassicaceae Family
Taxonomic Classification
Kingdom Plantae Family Brassicaceae
PlantGIR · v4.0
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Arabis alpina, the Alpine rock-cress, is a flowering plant in the family Brassicaceae, native to mountainous areas of Europe, North and East Africa, Central and Eastern Asia and parts of North America. In the British Isles, it is only known to occur in a few locations in the Cuillin Ridge of the Isle of Skye. It inhabits damp gravels and screes, often over limestone.
Data source
sync_pangenome_to_db.py
Wikipedia
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Image credit
© Wikimedia Commons — Arabis alpina
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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