Amborella trichopoda
Ambt Amborellaceae Amborellales

Amborella trichopoda

26 2n Chromosomes
Amborellaceae Family
Taxonomic Classification
Kingdom Plantae Phylum Magnoliophyta (Angiosperms) Class Amborellopsida Order Amborellales Family Amborellaceae
Genome & Ploidy
2n
26 chromosomes
Polyploidy History (PhyloWGD)
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Species Notes
Description
Amborella is a monotypic genus of understory shrubs or small trees endemic to the main island, Grande Terre, of New Caledonia in the southwest Pacific Ocean. The genus is the only member of the family Amborellaceae and the order Amborellales and contains a single species, Amborella trichopoda. Amborella is of great interest to plant systematists because molecular phylogenetic analyses consistently place it as the sister group to all other flowering plants, meaning it was the earliest group to evolve separately from all other flowering plants.
Data source
build_pgdd_species_jsons.py
Wikipedia
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Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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