Amaranthus tuberculatus
Amatu Amaranthaceae

Amaranthus tuberculatus

Amaranthaceae Family
Taxonomic Classification
Kingdom Plantae Family Amaranthaceae
PlantGIR · v1.1
Genome & Ploidy
Polyploidy History (PhyloWGD)
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Species Notes
Description
Amaranthus tuberculatus, commonly known as roughfruit amaranth, rough-fruited water-hemp, tall waterhemp, or common waterhemp, is a species of flowering plant. It is a summer annual broadleaf with a germination period that lasts several months. Tall waterhemp has been reported as a weed in 40 of 50 U.S.
Data source
sync_pangenome_to_db.py
Wikipedia
View article
Image credit
© Wikimedia Commons — Amaranthus tuberculatus
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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