Arabis hirsuta
Ahir2 Brassicaceae Brassicales

Arabis hirsuta

Arabis hirsuta

583 Mb Genome Size
16 Chromosomes
Chromosome Assembly Level
37.6 Mb N50
Brassicaceae Family
2024 Release Year
Taxonomic Classification
Kingdom Plantae Class Magnoliopsida Order Brassicales Family Brassicaceae
Darwin Tree of Life · ddAraHirs1.hap1.1 · GCA_964056655.1 · 2024-05-17
Polyploidy History (PhyloWGD)
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Species Notes
Common name(s)
Arabis hirsuta
Description
Arabis hirsuta, known as hairy rock-cress, is a flowering plant in the family Brassicaceae. In previous North American works, this species has been broadly defined to include plants native to Europe, Asia, and the northern half of North America, but is now more often restricted to a narrower subgroup restricted to Europe.
Downloads
Protein sequences
FASTA (.pep) — amino acid sequences for all annotated genes
Gene coordinates
BED format — chromosomal positions for MCScanX input
Coding sequences
FASTA (.cds) — nucleotide CDS for Ka/Ks analysis
Gene type annotations
TSV — gene duplication classifications
CDS not in local archive — search on NCBI
Grayed items are not yet available in local archive.
Analysis Tools
Synteny & Collinearity
MCScanX Dotplot Synteny Network SynVisio
Evolutionary Analysis
Ks / Riparian
Sequence Search
BLAST Locus Search
External Databases
Related Literature (genome, WGD & evolution)
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